PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA09g01740
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 295aa    MW: 32932.8 Da    PI: 7.6679
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA09g01740genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.0003113135123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y+C+ C++sF++   L  H  +H
  CA09g01740 113 YQCKTCNRSFPSFQALGGHRASH 135
                 9***********99999998887 PP

2zf-C2H213.20.00026195217123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++Cg  F++   L  H+r+H
  CA09g01740 195 HECSICGAEFNSGQALGGHMRRH 217
                 78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139128.0E-13112137IPR007087Zinc finger, C2H2
SuperFamilySSF576677.45E-9112135No hitNo description
SMARTSM003550.03113135IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.679113140IPR007087Zinc finger, C2H2
PROSITE patternPS000280115135IPR007087Zinc finger, C2H2
SuperFamilySSF576677.45E-9190217No hitNo description
PfamPF139124.8E-13194218IPR007087Zinc finger, C2H2
PROSITE profilePS501579.577195217IPR007087Zinc finger, C2H2
SMARTSM003550.011195217IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280197217IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MIKMEAHQEN DHQLNMVIKR RRTKRPRPPS PLTLAITTSS CSTVEGASGG ELVDGHVANS  60
LSCVSKCTGW MDDQIVRNTN QEEEDMANCL ILLAQGHNFQ KSSAQSPMTL DVYQCKTCNR  120
SFPSFQALGG HRASHKKPKT LDDQVRNLKS IDHQVLVDNR SKLNDEDHVT TLSLQIPNSN  180
TITTTSTNKN KNRVHECSIC GAEFNSGQAL GGHMRRHRPL PNSIAITSNP NHTEESHHHH  240
HHDQQIKNTR TFLSLDLNLP APEDDHRPEN SKFTFASKEQ VIVFSASPLV DCHY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12327KRPRP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755210.0HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016554089.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLM0ZX271e-142M0ZX27_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000098711e-142(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12622480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.16e-50C2H2 family protein